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1.
Front Microbiol ; 14: 1275649, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37908544

RESUMO

Infectious hematopoietic necrosis (IHN) is a major disease that limits the culture of rainbow trout. In practical production, it has been found that the temperature of the culture water is a crucial factor affecting its mortality. Currently, little is known about how temperature affects the immune response of rainbow trout gut microbiota and metabolites to IHNV. In this study, our main objective is to analyze the changes in gut microorganisms of rainbow trout (juvenile fish with a consistent genetic background) after 14 days of infection with IHNV (5 × 105 pfu/fish) at 12-13°C (C: injected with saline, A: injected with IHNV) and 16-17°C (D: injected with saline, B: injected with IHNV) using metagenomic and metabolomic analyses, and to screen for probiotics that are effective against IHNV. The results showed that infection with IHNV at 12-13°C caused Eukaryote loss. Compared to Group C, Group A showed a significant increase in harmful pathogens, such as Yersiniaceae, and a significant alteration of 4,087 gut metabolites. Compared to group D, group B showed a significant increase in the abundance of Streptococcaceae and Lactococcus lactis, along with significant changes in 4,259 intestinal metabolites. Compared with their respective groups, the levels of two immune-related metabolites, 1-Octadecanoyl-glycero-3-phosphoethanolamine and L-Glutamate, were significantly upregulated in groups A and B. Compared to group B, Group A showed significantly higher pathogenic bacteria including Aeromonas, Pseudomonas, and Yersiniaceae, while group B showed a significant increase in Streptococcaceae and Lactococcus lactis. Additionally, there were 4,018 significantly different metabolites between the two groups. Interestingly, 1-Octadecanoyl-sn-glycero-3-phosphoethanolamine and L-Glutamate were significantly higher in group A than in group B. Some of the different metabolites in C vs. A are correlated with Fomitopsis pinicola, while in D vs. B they were correlated with Lactococcus raffinolactis, and in A vs. B they were correlated with Hypsizygus marmoreus. This study exposed how rainbow trout gut microbiota and metabolites respond to IHNV at different temperatures, and screens beneficial bacteria with potential resistance to IHN, providing new insights and scientific basis for the prevention and treatment of IHN.

2.
Anim Biosci ; 36(10): 1499-1507, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37170508

RESUMO

OBJECTIVE: The study investigated the origin of the Akhal-Teke horse using genome-wide single-nucleotide polymorphism (SNP) data and mitochondrial hypervariable region 1 (HVR-1) nucleotide sequences. METHODS: Genome-wide SNP data from 22 breeds (481 horses) and mitochondrial HVR-1 sequences from 24 breeds (544 sequences) worldwide to examine the origin of the Akhal- Teke horse. The data were analyzed using principal component analysis, linkage disequilibrium analysis, neighbor-joining dendrograms, and ancestry inference to determine the population relationships, ancestral source, genetic structure, and relationships with other varieties. RESULTS: A close genetic relationship between the Akhal-Teke horse and horses from the Middle East was found. Analysis of mitochondrial HVR-1 sequences showed that there were no shared haplotypes between the Akhal-Teke and Tarpan horses, and the mitochondrial data indicated that the Akhal-Teke horse has not historically expanded its group. Ancestral inference suggested that Arabian and Caspian horses were the likely ancestors of the Akhal- Teke horse. CONCLUSION: The Akhal-Teke horse originated in the Middle East.

3.
Opt Express ; 30(20): 35608-35623, 2022 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-36258508

RESUMO

We present the design, fabrication, and characterization of cascaded silicon-on-insulator photonic crystal microring resonators (PhCMRRs) for dual-parameter sensing based on a multiple resonances multiple modes (MRMM) technique. Benefitting from the slow-light effect, the engineered PhCMRRs exhibit unique optical field distributions with different sensitivities via the excitation of dielectric and air modes. The multiple resonances of two distinct modes offer new possibilities for enriching the sensing receptors with additional information about environmental changes while preserving all essential properties of traditional microring resonator based sensors. As a proof of concept, we demonstrate the feasibility of extracting humidity and temperature responses simultaneously with a single spectrum measurement by employing polymethyl methacrylate as the hydrophilic coating, obtaining a relative humidity (RH) sensitivity of 3.36 pm/%RH, 5.57 pm/%RH and a temperature sensitivity of 85.9 pm/°C, 67.1 pm/°C for selected dielectric mode and air mode, respectively. Moreover, the MRMM enriched data further forges the capability to perform mutual cancellation of the measurement error, which improves the sensing performance reflected by the coefficient of determination (R2-value), calculated as 0.97 and 0.99 for RH and temperature sensing results, respectively.

4.
Opt Express ; 30(19): 34149-34158, 2022 Sep 12.
Artigo em Inglês | MEDLINE | ID: mdl-36242435

RESUMO

We measure the photothermal nonlinear response in suspended cubic silicon carbide (3C-SiC) and 3C-SiC-on-insulator (SiCOI) microring resonators. Bi-stability and thermo-optic hysteresis is observed in both types of resonators, with the suspended resonators showing a stronger response. A photothermal nonlinear index of 4.02×10-15 m2/W is determined for the suspended resonators, while the SiCOI resonators demonstrate one order of magnitude lower photothermal nonlinear index of 4.32×10-16 m2/W. Cavity absorption and temperature analysis suggest that the differences in thermal bi-stability are due to variations in waveguide absorption, likely from crystal defect density differences throughout the epitaxially grown layers. Furthermore, coupled mode theory model shows that the strength of the optical bi-stability, in suspended and SiCOI resonators can be engineered for high power or nonlinear applications.

5.
Nat Commun ; 13(1): 1851, 2022 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-35383188

RESUMO

Owing to its attractive optical and electronic properties, silicon carbide is an emerging platform for integrated photonics. However an integral component of the platform is missing-an electro-optic modulator, a device which encodes electrical signals onto light. As a non-centrosymmetric crystal, silicon carbide exhibits the Pockels effect, yet a modulator has not been realized since the discovery of this effect more than three decades ago. Here we design, fabricate, and demonstrate a Pockels modulator in silicon carbide. Specifically, we realize a waveguide-integrated, small form-factor, gigahertz-bandwidth modulator that operates using complementary metal-oxide-semiconductor (CMOS)-level voltages on a thin film of silicon carbide on insulator. Our device is fabricated using a CMOS foundry compatible fabrication process and features no signal degradation, no presence of photorefractive effects, and stable operation at high optical intensities (913 kW/mm2), allowing for high optical signal-to-noise ratios for modern communications. Our work unites Pockels electro-optics with a CMOS foundry compatible platform in silicon carbide.

6.
Opt Lett ; 47(6): 1549-1552, 2022 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-35290361

RESUMO

Oligomer metasurfaces have attracted a lot of attention in recent years because of their ability to drive strong resonance effects. In this work, by perturbing the symmetry of the structure, we find that there are a large number of resonance modes in the oligomer metasurfaces associated with the optical bound states in the continuum (BICs) near the communication wavelength. When the positions of two nanodisks of the hexamer oligomers are moved along the x- or y-directions at the same time, the mirror symmetry is broken, and an electric quadrupole BIC and three magnetic dipole BICs are excited. The results of near-field distribution of three-dimensional nanodisks and far-field scattering of multiple dipoles in each quasi-BIC reveal that the four BICs present different optical characteristics. It is noted that the method of symmetry breaking by moving the position of nanodisks can accurately control the asymmetric parameter of symmetry-protected BICs, which provides a route for the realization of ultrahigh quality (Q)-factor oligomer metasurfaces in experiment.

7.
Artigo em Inglês | MEDLINE | ID: mdl-34653947

RESUMO

Rainbow trout (Oncorhynchus mykiss) is an important economic fish in China. Skin color affects the economic value of trout. However, the molecular mechanism of the skin color variation between wild-type (WR) and yellow mutant rainbow trout (YR) is unclear. We sequenced mRNAs and miRNAs of dorsal skin to identify key color variation-associated mRNAs and miRNAs between WR and YR. Overall, 2060 out of 3625 differentially expressed genes were upregulated in YR, and 196 out of 275 differentially expressed miRNAs were downregulated in WR. We identified three key YR-upregulated genes related to the formation of xanthophores (GCH1, SLC2A11, and SOX10). Interestingly, several genes related to melanogenesis (TYR, TYRP1, TYRP2, MC1R, MITF, PMEL, SLC45A2, and OCA2) were downregulated in WR. Integrated analysis identified five miRNAs that target at least two skin color-related genes (miR-495-y, miR-543-y, miR-665-z, miR-433-y, and miR-382-x). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses of target genes identified noncoding RNA metabolic process as the most significantly enriched GO term, and several metabolic pathways associated with skin color were enriched significantly, such as tyrosine metabolism, histidine metabolism, and vitamin B6 metabolism. Quantitative real-time PCR of selected mRNAs and miRNAs validated the reliability of the integrated analysis. This study provides in-depth insights into the molecular mechanism of skin color variation between WR and YR, which will accelerate the genetic selection and breeding of rainbow trout with consumer-favored traits.


Assuntos
MicroRNAs , Oncorhynchus mykiss , Animais , MicroRNAs/genética , Oncorhynchus mykiss/genética , RNA Mensageiro , Reprodutibilidade dos Testes , Pigmentação da Pele/genética , Transcriptoma
8.
J Fish Biol ; 99(6): 1798-1803, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34405404

RESUMO

MicroRNAs (miRNAs) are being extensively studied as they function as key metabolic regulators which play a role in the heat stress response. However, the role of miRNAs in heat stress remains uncertain and many new miRNAs have not yet been discovered. In a previous study, we performed high-throughput sequencing of differentially expressed miRNAs identified on exposing rainbow trout (Oncorhynchus mykiss) to heat stress (18 vs. 24°C), which led to the identification of two novel miRNAs, temporarily named novel miR-434 and -242. The differential expression level of these miRNAs was extremely significant (P < 0.01); we analysed target gene mRNA transcripts by bioinformatics software (miRanda). We found novel miR-434 and -242 were predicted to regulate the transcripts of heat shock 70-kDa protein 4-like (HSPA4L) and calreticulin (CRT), respectively, by bioinformatics software. Here our core objective was to validate if HSPA4L and CRT are indeed the target genes of novel miR-434 and -242, respectively, and for this purpose we used the dual-luciferase reporter assay system. Target gene sequences were synthesized and cloned into a dual-luciferase vector. To better understand the function of the target genes, we combined the previous sequencing results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. We found that novel miR-434 regulated HSPA4L expression by binding to a putative binding site in the 3'-UTR of HSPA4L, and luciferase activity inhibition was observed. In contrast, novel miR-242 was not involved in regulating CRT expression. To conclude, we believe our results should serve as a foundation for future studies aiming to comprehensively understand the mechanisms used by rainbow trout to cope with heat stress.


Assuntos
Resposta ao Choque Térmico , MicroRNAs , Oncorhynchus mykiss , Animais , Perfilação da Expressão Gênica , Resposta ao Choque Térmico/genética , Sequenciamento de Nucleotídeos em Larga Escala , MicroRNAs/genética , Oncorhynchus mykiss/genética , RNA Mensageiro
9.
Expert Rev Mol Diagn ; 21(4): 363-370, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33840347

RESUMO

Background: Rapid Lateral Flow Test (LFT) has been broadly utilized in detection or diagnosis of numerous disease-related antigens and antibodies. It is the most popular format of point-of-care test (POCT) and quickest and easiest way to detect a targeted molecule. In the combat against COVID-19 pandemic, hundreds of POCTs have been developed and are commercially available now. They are designed to detect either a SARS-CoV-2 viral antigen or IgG and IgM antibodies binding to it. Among the binding antibodies, a special type of functional antibodies that block the interaction between SARS-CoV-2 virus and its human receptor, neutralizing antibodies (NAbs), are of particular interest to public as well as in vaccination management. However as of today, POCTs for the detection of SARS-CoV-2 NAbs remain under late stage of development.Scope and method:In this review, we first summarize the importance of awareness and monitoring of SARS-CoV-2 NAbs in the combat against COVID-19 pandemic. Secondly, we compare the available methods for the detection of SARS-CoV-2 NAbs. Next, we describe challenges in the development of a rapid lateral flow test for the detection of SARS-CoV-2 NAbs. Finally, we outline its product formats and applications in research and in disease management. Conclusion:Vaccine effectiveness is unknown for an individual unless measured. NAb level is the most viable measurement for vaccine effectiveness or immunity. A broadly accessible NAb POCT is urgently needed.


Assuntos
Anticorpos Neutralizantes/sangue , COVID-19/imunologia , Imunoensaio/métodos , SARS-CoV-2/imunologia , Anticorpos Neutralizantes/análise , Anticorpos Neutralizantes/imunologia , Anticorpos Antivirais/sangue , COVID-19/virologia , Humanos , Testes de Neutralização/métodos
10.
Anim Biosci ; 34(11): 1776-1783, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-33705630

RESUMO

OBJECTIVE: This project aimed to evaluate the effects of both different additives and filling methods on nutritive quality, fermentation profile, and in situ digestibility of whole plant corn silage. METHODS: Whole plant corn forage harvested at 26.72% dry matter (DM) was chopped and treated with two filling methods, i) fill silos at one time (F1), ii) fill silos at three times (F3), packing samples into one/three silo capacity at the first day, another one/three capacity at the second day, then one/three at the third day, three replicates. For each replicate, samples were treated with three additives, i) control (CTRL, no additive), ii) Sila-Max (MAX, Ralco Nutrition Inc., Marshall, MN, USA), and iii) Sila-Mix (MIX, Ralco Nutrition Inc., USA). With three replicates of each secondary treatment, there were nine silos, 54 silos in total. Each silo had a packing density of 137.61 kg of DM/m3. All silos were weighed and stored in lab at ambient temperature. RESULTS: After 60 d of ensiling, all items showed good silage fermentation under MAX filled one time or three times (p<0.01). Higher silage quality for all additives was obtained at filling one time than that filled three times (p<0.01). The highest DM and lowest DM loss rate (DMLR) occurred to MAX treatment at two filling methods (p<0.01); Digestibility of acid detergent fiber, neutral detergent fiber (NDF), and curde protein had the same results as silage quality (p<0.01). Yield of digestible DM and digestible NDF also showed higher value under MAX especially for filling one time (p<0.05). CONCLUSION: All corn silages showed good fermentation attributes (pH<4.0). The forage filled one time had higher silage quality than that filled three times (p<0.01). MAX with homofermentative lactic acid bacteria enhanced the lactic acid fermentation, silage quality and nutrient digestibility, and so improved the digestible nutrient yield.

11.
Materials (Basel) ; 13(17)2020 Aug 27.
Artigo em Inglês | MEDLINE | ID: mdl-32867228

RESUMO

We compared the catalytic effects of two polymers (soluble starch and apple pectin) on the flocculation of kaolinite suspension. Moreover, the relationship between the zeta potential value and the time when kaolin particle sedimentation occurred was verified, and the mechanism of flocculation was analyzed. Additionally, a constitutive model was proposed to simulate the non-ideal sedimentation of clay particles in an aqueous system under constant gravity. This model not only considers the inhomogeneity of the solute but also simulates the change in clay concentration with time during the deposition process. This model proposes a decay constant (α) and sedimentation coefficient (s). The model can also be used to calculate the instantaneous sedimentation rate of the clay suspensions at any time and any depth for the settling cylinder. These sedimentary characteristics were simulated by adopting the established deposition model. The results show that the model is capable of predicting the time required for the complete sedimentation of particles in the aqueous system, suggesting the feasibility of engineering wastewater treatment, site dredging, etc.

12.
Food Sci Anim Resour ; 40(4): 563-577, 2020 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-32734264

RESUMO

This study assessed breed differences in fatty acid composition and meat quality of Longissimus thoracis et lumborum (LTL) and semitendinosus (SE) of Angus× Chinese Simmental (AS), Wagyu×Chinese Simmental (WS), and Chinese Simmental (CS). CS (n=9), AS (n=9) and WS (n=9) were randomly selected from a herd of 80 bulls which were fed and managed under similar conditions. Fatty acid profile and meat quality parameters were analyzed in duplicate. Significant breed difference was observed in fatty acid and meat quality profiles. AS exhibited significantly (p<0.05) lower C16:0 and higher C18:1n9c compared with CS. AS breed also had a tendency (p<0.10) to lower total saturated fatty acid (SFA), improve C18:3n3 and total unsaturated fatty acid (UFA) compared with CS. Crossbreed of AS and WS had significantly (p<0.05) improved the lightness, redness, and yellowness of muscles, and lowered cooking loss, pressing loss, and shear force compared with CS. These results indicated that fatty acid composition and meat quality generally differed among breeds, although the differences were not always similar in different tissues. Fatty acid composition, meat color, water holding capacity, and tenderness favored AS over CS. Thus, Angus cattle might be used to improve fatty acid and meat quality profiles of CS, and AS might contain better nutritive value, organoleptic properties, and flavor, and could be potentially developed as an ideal commercial crossbreed.

13.
Animals (Basel) ; 10(1)2020 Jan 16.
Artigo em Inglês | MEDLINE | ID: mdl-31963250

RESUMO

Herein, we performed a proteomic analysis of tenderloin and flank steaks from Simmental cattle using the isobaric tags for a relative and absolute quantification (iTRAQ) approach. We identified 17 amino acids in both steaks, and Gly, Cys, Ile, Lys, and Pro differed most in abundance between the steak types (p < 0.05). A comparison of the expression patterns in steaks revealed 128 differentially expressed proteins (DEPs), of which 44 were up-regulated and 84 were down-regulated. Furthermore, 27 DEPs (p < 0.05) were subjected to gene ontology (GO) analysis, and many were found to be related to oxidation-reduction, metabolism, hydrogen ion transmembrane transport, transport, the tricarboxylic acid (TCA) cycle, mitochondrial electron transport, and the conversion of nicotinamide adenine dinucleotide (NADH) to ubiquinone. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis also implicated these DEPs in various signalling pathways, including oxidative phosphorylation, cardiac muscle contraction, the TCA cycle, biosynthesis, and the metabolism. These findings provide a new insight into key proteins involved in the determination of amino acid composition in beef.

14.
RSC Adv ; 10(67): 41249, 2020 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-35532527

RESUMO

[This corrects the article DOI: 10.1039/C9RA06761B.].

15.
PLoS One ; 14(5): e0217054, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31107883

RESUMO

Oregano essential oil (OEO), which has antimicrobial properties, may be used for altering the ruminal pH and microbial populations of sheep, as observed by the altered volatile fatty acid patterns. To further elucidate the effects of OEO on ruminal pH and microbial populations of sheep, 3 German merino sheep × local sheep crossbred rams with permanent ruminal fistulas were randomly assigned to a 3 × 3 Latin square design with 12-d periods. The treatments were as follows: control (CON); OEO4: OEO supplied at 4 g•d-1; and OEO7: OEO supplied at 7 g•d-1. Starting on day 11, rumen fluid was collected at 0 h, and at 4, 8, 12, 24 and 48 h after supplying OEO, and then pH values of rumen fluid were immediately measured. The abundance of microbial populations was determined by using qPCR. The ruminal pH values were similar among the sheep from all treatments. The abundance of ruminal fungi was higher for the sheep supplied OEO7 compared with the sheep supplied CON and OEO4, especially at 4 and 12 h. The abundance of ruminal protozoa decreased with supplied OEO, indicating that OEO could inhibit the protozoa. The abundance of the total ruminal bacteria was similar for the sheep from all treatments, but R. flavefaciens, R. albus and F. succinogenes increased in the sheep supplied OEO4 compared with those in the sheep supplied CON, however, the sheep supplied OEO7 had higher abundances of R. flavefaciens than the sheep supplied CON. These results demonstrated that supplying OEO to sheep did not affect the ruminal pH but could shift the rumen microbial population to one with less protozoa. Supplying OEO can preferentially enhance the growth of certain rumen microbial populations, but the shifts were influenced by the supply rate. Therefore, supplying low amount (i.e. 4 g•d-1) of OEO could have positive effects on ruminal microbial populations, whereas supplying elevated doses of OEO could be detrimental to those same ruminal microbial populations.


Assuntos
Óleos Voláteis/farmacologia , Origanum/química , Óleos de Plantas/farmacologia , Rúmen/efeitos dos fármacos , Rúmen/microbiologia , Ovinos/microbiologia , Ração Animal , Animais , Anti-Infecciosos/farmacologia , Primers do DNA , Dieta/veterinária , Suplementos Nutricionais , Ácidos Graxos/química , Feminino , Fermentação , Concentração de Íons de Hidrogênio , Lactação/efeitos dos fármacos , Masculino , RNA Ribossômico 16S/metabolismo
16.
Funct Integr Genomics ; 19(5): 775-786, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31076931

RESUMO

Recently, the research of animal microRNAs (miRNAs) has attracted wide attention for its regulatory effect in the development process and the response to abiotic stresses. Rainbow trout is a commercially and cold water fish species, and usually encounters heat stress, which affects its growth and leads to a huge economic loss. But there were few investigations about the roles of miRNAs in heat stress in rainbow trout. In this study, miRNAs of rainbow trout which were involved in heat stress were identified by high-throughput sequencing of six small RNA libraries from head kidney tissues under control (18 °C) and heat-treated (24 °C) conditions. A total of 392 conserved miRNAs and 989 novel miRNAs were identified, of which 78 miRNAs were expressed in different response to heat stress. Ten of these miRNAs were further validated by quantitative real-time PCR. In addition to, including 393 negative correlation miRNA-target gene pairs, several important regulatory pathways were involved in heat stress of the potential target genes, including protein processing in endoplasmic reticulum, NOD-like receptor signaling pathway, and phagosome. Our data significantly advance understanding of heat stress regulatory mechanism of miRNA in the head kidney of rainbow trout, which provide a useful resource for the cultivation of rainbow trout.


Assuntos
Regulação da Expressão Gênica , Rim Cefálico/metabolismo , Resposta ao Choque Térmico , Sequenciamento de Nucleotídeos em Larga Escala/métodos , MicroRNAs/genética , Oncorhynchus mykiss/genética , Transcriptoma , Animais , Transdução de Sinais , Estresse Fisiológico
17.
J Fish Biol ; 95(2): 540-554, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30993691

RESUMO

We assessed the expression stability of several messenger (m)RNAs and micro (mi)RNAs from liver and head kidney of rainbow trout Oncorhynchus mykiss using high-throughput RNA sequencing (RNA-seq) and miRNA-seq data. Additionally, four commonly used reference genes and one small non-coding RNA (u6) were also selected to identify ideal reference mRNAs and miRNAs for quantitative real-time (qrt)-PCR analysis of heat stress responses. GeNorm, NormFinder, BestKeeper and comparative ΔCt were employed for analysis of qrt-PCR data to systematically assess the expression stability of candidate mRNAs and miRNAs and stability was ranked using geometric means. ß-actin and ef1-α were the most stably expressed reference mRNAs in liver and head kidney, respectively and ssa-mir-26a-5p and ssa-mir-462b-5p were the most stably expressed miRNAs in these tissues. This is the first identification of appropriate reference mRNAs and miRNAs for qrt-PCR analysis of O. mykiss under heat stress.


Assuntos
Resposta ao Choque Térmico/genética , Oncorhynchus mykiss/genética , Animais , Perfilação da Expressão Gênica , Rim Cefálico/metabolismo , Sequenciamento de Nucleotídeos em Larga Escala , Fígado/metabolismo , MicroRNAs/metabolismo , Oncorhynchus mykiss/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Reação em Cadeia da Polimerase em Tempo Real
18.
Artigo em Inglês | MEDLINE | ID: mdl-30851505

RESUMO

Rainbow trout (Oncorhynchus mykiss) are a cold-water salmonid species that is highly susceptible to heat stress. Summer temperature stress is a common issue in trout aquaculture. To better understand the molecular mechanisms of the heat-stress response in the trout, we used label-free quantitative proteome techniques to identify differentially expressed proteins in the livers of rainbow trout exposed to heat stress. We identified 3362 proteins and 152 differentially expressed proteins (p < 0.05; fold-change >2). Of these, 37 were uniquely expressed in the heat-stress group and 35 were uniquely expressed in the control group. In addition, 42 proteins were significantly upregulated (fold-change >2) and 38 proteins were significantly downregulated (fold-change >2). GO (Gene Ontology) analysis indicated that these differentially expressed proteins were primarily expressed in the nucleus, extracellular matrix, and cytoplasm, and were associated with a variety of functions, including protein binding/bridging and enzyme facilitation. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis of the differentially expressed proteins showed that, during high temperature stress, many biological processes were extensively altered, particularly the estrogen signaling pathway, the complement and coagulation cascades, and the platelet activation pathway. Our study focused on the identification of a systematic approach for the characterization of regulatory networks. Our results provide a framework for further studies of the heat-stress response in fish.


Assuntos
Proteínas de Peixes/genética , Resposta ao Choque Térmico , Oncorhynchus mykiss/genética , Animais , Perfilação da Expressão Gênica , Regulação da Expressão Gênica , Ontologia Genética , Oncorhynchus mykiss/fisiologia , Transcriptoma
19.
BMC Microbiol ; 19(1): 30, 2019 02 04.
Artigo em Inglês | MEDLINE | ID: mdl-30717674

RESUMO

BACKGROUND: Essential Oils (EO) are complex mixtures of plant secondary metabolites that have been proposed as promising feed additives for mitigating methane and ammonia emissions. We have previously demonstrated that Essential Oil-Cobalt (EOC) supplementation resulted in increased average daily gain and improved phenotypes (cashmere fiber traits, carcass weight, and meat quality) when cashmere goats received supplementation at approximately 2 mg/kg of body weight. However, the ruminal microbiological effects of EO remain poorly understood with regard to the extent to which ruminal populations can adapt to EO presence as feed ingredients. The effects of varying levels of EO require additional study. RESULTS: In this study, we conducted metagenomic analyses using ruminal fluid samples from three groups (addition of 0, 52, and 91 mg) to evaluate the influence of dietary EOC supplementation on goat rumen bacterial community dynamics. EOC addition resulted in changes of ruminal fermentation types and the EOC dose strongly impacted the stability of ruminal microbiota. The Bacteroides sp. and Succinivibrio sp. type bacterial community was positively associated with improved volatile fatty acid production when the diet was supplemented with EOC. CONCLUSIONS: A clear pattern was found that reflected rapid fermentative improvement in the rumen, subsequent to butyrate metabolism and EOC based feed additives may affect rumen microbes to further improve feed conversion. This observation indicates that EOC can be safely used to enhance animal productivity and to reduce ammonia and waste gas emissions, thus positively impacting the environment.


Assuntos
Cobalto/administração & dosagem , Suplementos Nutricionais , Metagenômica , Microbiota/efeitos dos fármacos , Óleos Voláteis/administração & dosagem , Rúmen/microbiologia , Ração Animal/análise , Animais , Digestão , Ácidos Graxos Voláteis/metabolismo , Fermentação , Cabras , Masculino , Metano/metabolismo
20.
RSC Adv ; 9(70): 40855-40862, 2019 12 09.
Artigo em Inglês | MEDLINE | ID: mdl-35540083

RESUMO

The influence of elastic deformation and elastic modulus on the release of adhered bacteria was investigated in this paper. Four silicone elastomers (SE) with different elastic moduli and one rigid polystyrene sheet were prepared to verify the antifouling effect of elastic deformation. The SE film has an elastic deformation effect under the stimulus of fluid medium, which makes the surface unstable. That could reduce the adhesion of fouling organisms and provide a foul-release basis. Distinct anti-adhesion properties were observed in our study in that cells more easily adhered to the rigid surface than the elastic surfaces under hydrodynamic conditions. However, the bacterial attachment test showed a similar antifouling performance of SE and the rigid surface under static conditions. To investigate the anti-adhesion ability of the elastic surface and rigid surface, the bacterial adhesive kinetics were studied by Discrete Element Method (DEM)-Computational Fluid Dynamics (CFD) coupling simulation. Results indicated the number of bacteria adhering on the elastic wall was significantly lower than on the rigid wall. And as the elastic modulus increased, the bacterial adhesion increased accordingly within a certain range. This work should not only enhance understanding of elastomer-based antifouling materials, but also facilitate the design and construction of other types non-toxic foul-release materials.

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